Fruit texture is a key determinant of consumer preference, shelf life, and postharvest quality, especially in climacteric fruits such as melon. Softening during ripening is largely driven by remodeling of the cell wall, where pectin plays a central structural role. Homogalacturonan can either form rigid calcium-linked “egg-box” networks or remain loosely associated, depending on its degree of methyl-esterification. While enzymes involved in pectin degradation have been extensively studied, far less is known about how methyl-esterification is regulated at the transcriptional level during fruit development. Based on these challenges, there is a clear need to investigate how gene regulatory networks control pectin modification and fruit softening.
Researchers from Shenyang Agricultural University report a new molecular mechanism controlling fruit softening in melon, published (DOI: 10.1093/hr/uhaf253) in Horticulture Research in 2025. The study identifies the transcription factor CmbZIP11 as a key regulator that activates pectin methyltransferase genes during ripening. By modulating the methyl-esterification of homogalacturonan in the cell wall, this regulatory pathway alters pectin structure, reduces calcium cross-linking, and accelerates tissue softening. The findings provide new insight into how transcriptional control is translated into physical changes in fruit texture.
Using comparative transcriptomics and weighted gene co-expression network analysis, the authors identified CmPMT1 and CmPMT15 as core genes positively associated with homogalacturonan methyl-esterification. Transient overexpression experiments showed that elevated expression of these genes significantly reduced fruit firmness during ripening, whereas overexpression of the Golgi SAM transporter CmGoSAMT1 had little effect on texture.
Biochemical analyses revealed that increased pectin methyltransferase activity decreased calcium-bound pectin fractions while increasing water-soluble pectin, indicating weakened “egg-box” structures in the cell wall. Immunofluorescence and ruthenium red staining confirmed a reduction in tightly cross-linked homogalacturonan, making pectin more susceptible to enzymatic degradation.
Structural modeling further demonstrated that CmPMT1 and CmPMT15 possess conserved catalytic pockets capable of simultaneously binding the methyl donor S-adenosyl-L-methionine and homogalacturonan chains, supporting their role in pectin methyl assembly. Importantly, the transcription factor CmbZIP11 was shown to directly activate CmPMT1 by binding to a C-box motif in its promoter, positioning CmbZIP11 as an upstream regulator that links transcriptional control to cell wall remodeling and fruit softening.
“Fruit softening is often described as a biochemical black box,” said the study’s corresponding author. “Our work shows that it can be traced back to a clear transcriptional switch that controls how pectin is assembled in the cell wall. By regulating pectin methyltransferase genes, CmbZIP11 determines whether homogalacturonan forms rigid calcium networks or remains accessible to degradation. This provides a molecular explanation for texture variation during ripening.”
Understanding how transcription factors control pectin architecture opens new opportunities for precision fruit breeding. Targeting regulators such as CmbZIP11 could allow breeders to fine-tune fruit firmness without broadly disrupting ripening processes. This strategy may help develop melon varieties with improved texture, extended shelf life, and better resistance to postharvest losses. Beyond melon, the conserved nature of pectin methyl-esterification suggests that similar regulatory mechanisms may operate in other fleshy fruits. The findings therefore offer a conceptual framework for manipulating cell wall chemistry to balance fruit quality, transportability, and consumer preference.
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References
DOI
10.1093/hr/uhaf253
Original Source URL
https://doi.org/10.1093/hr/uhaf253
Funding information
This work was sponsored by China Agriculture Research System of MOF and MARA (CARS-25) and Liao Ning Revitalization Talents Program (XLYC2402014).
About Horticulture Research
Horticulture Research is an open access journal of Nanjing Agricultural University and ranked number one in the Horticulture category of the Journal Citation Reports ™ from Clarivate, 2023. The journal is committed to publishing original research articles, reviews, perspectives, comments, correspondence articles and letters to the editor related to all major horticultural plants and disciplines, including biotechnology, breeding, cellular and molecular biology, evolution, genetics, inter-species interactions, physiology, and the origination and domestication of crops.