A German-Chinese research team led by Konstanz evolutionary biologist Axel Meyer has sequenced the genome of the pygmy seahorse. The researchers were able to identify gene losses that are responsible for the shortened nose and enable the animal's astonishing camouflage and mimicry to their host coral.

Pygmy seahorses (Hippocampus bargibanti) are masters of camouflage. They are among the smallest vertebrates, just the size of a thumbnail, and live in coral reefs in the western Pacific. There they coexist in symbiosis with a certain type of coral to which they have amazingly adapted their body shape and colour. A research team from the University of Konstanz and the South China Sea Institute of Oceanology in Guanghzhou, China, has analyzed the genome of these seahorses and discovered how they manage to be so astonishingly similar to their corals.

Imitation in colour and shape
Just 45 years ago, pygmy seahorse were completely unknown. Thanks to their extremely good camouflage, they had simply not been discovered before. Today, knowledge of their biology is still fragmentary, as it is very difficult to find them or even keep them in aquaria. The colour and structure of their skin corresponds exactly to the coral to which they cling with their tails day and night, waiting for the food to swim by.
In the course of evolution, these animals have developed small knobs on their skin, which imitate the shape and colour of the coral's polyps, and even their snouts are shortened to the length of polyps, making them as inconspicuous as possible. "Seahorses usually have an elongated snout that resembles a horse (Greek "hippos"). Hence the scientific name of seahorses: Hippocampus. However, this would set the pygmy seahorse apart from the coral's shape. We were highly interested in finding out at what stage of development this deviating appearance of the pgymy seahorse is caused to provide good camouflage and which genes are responsible", explains Axel Meyer. The professor of evolutionary biology at the University of Konstanz is the lead author of the study jointly with Professor Lin Qiang from the Institute of Oceanology at the Chinese Academy of Sciences in Guangzhou, China. To get to the bottom of the question of which genes are responsible, the researchers and their team looked at the expression pattern of the pgymy seahorse's genes at different stages of development of the snout region.

Eternal baby schema
In the early stages of development, the head of all seahorse species is still short and, together with the squat facial proportions, corresponds to the baby schema known since Konrad Lorenz. This cuteness factor at a young age is also known from mammals. "Normally, a combination of different genetic components causes the snout of a seahorse to grow proportionally faster than other parts of the body from a certain age and thus become elongated. In the pygmy seahorse, however, we have now discovered that these different growth rates are suppressed because the hoxa2b gene has been lost", says Meyer.
Consequently, growth is not stimulated, and the snout remains knob-like. "We were also able to demonstrate this with CRISPR-Cas9 experiments on zebrafish. The head of the pygmy seahorse remains stuck in the 'childlike' earlier stage of development. This shape mimicks the coral perfectly and makes it more difficult for predators to detect these animals on the corals", Meyer explains. "With its short snout, the pygmy seahorse merges visually with the coral. A long nose, on the other hand, would stand out and make camouflage less perfect".

Many lost genes
In addition to the shape of the head, the research team also investigated the genetic basis of the skin colour, the formation of skin knobs and the immune system of the animals. They discovered, among other things, that the pygmy seahorse has lost an unusually large number of immune genes in the course of its evolution, which split off from full-sized seahorses about 18 million years ago. They also found out that, when it comes to the immune system, these fish have the smallest known set of genes of all vertebrates.
"This is probably due to the fact that coral toxins can be tolerated by the pygmy seahorses and even provide them with protection against microbes. Consequently, their immune system no longer needs the corresponding genes. Furthermore, the sex roles of seahorses have been switched, as males incubate the eggs in their brood pouch. As, however, the eggs are not genetically identical to the cells of the male's body, they would normally be attacked as foreign tissue. Losing immune-system genes was necessary to weaken the corresponding immune response", says Meyer.
This makes pygmy seahorses a prime example of evolution: What is advantageous for survival prevails or is reinforced. What is disadvantageous or unnecessary, on the other hand, disappears over the generations. "In all of these adaptations, we see examples of massive gene losses and a seemingly paradoxical release of evolutionary creativity, which ultimately explains the unusual appearance and remarkable biology of these creatures", concludes Meyer. Key facts:

• Original publication: M. Qu, Y. Zhang, J. Woltering, Y. Liu, Z. Liu, S. Wan, H. Jiang, H. Yu, Z. Chen, X. Wang, Z. Zhang, G. Qin, R. Schneider, A. Meyer, Q. Lin (2025): Symbiosis with and mimicry of corals were facilitated by immune gene loss and body remodeling in the pygmy seahorse, Proc. Natl. Acad. Sci. U.S.A. 122 (35) e2423818122. DOI: 10.1073/pnas.2423818122
• Press contact: Axel Meyer, Professor of Zoology and Evolutionary Biology at the University of Konstanz, phone +49 7531 88-4163, email: axel.meyer@uni-konstanz.de