New Agents with Genome Mining and Mutagenesis
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New Agents with Genome Mining and Mutagenesis


Bacteria and other micro-organisms generate a range of substances that are not necessary for their survival. However, these “secondary metabolites” do provide them with environmental benefits. For example, they aid in communication or defense against other organisms. “The breadth of these compounds is far from being fully understood,” says Dirk Tischler. The researchers hope to be able to use these natural substances as bioactive compounds in medications, or as a blueprint for synthesizing new agents. “Penicillin is one such secondary metabolite,” Tischler clarifies.

Effective against fungi and certain bacteria

Of particular interest are the kutznerides, which are effective against some fungi as well as Gram-positive bacteria. Their effectiveness is determined by functional groups. The research team is currently focusing on kutznerides whose functional group contains a bond between two nitrogen atoms. Experts refer to this functional group as hydrazine.
“These compounds do occur in nature,” says Tischler. “But we have been able to influence them and their environment in a targeted manner.” The researchers have identified previously unknown enzymes that initiate the nitrogen-nitrogen bond and connect the atoms. They further optimized the enzymes via mutagenesis so that they could convert different substrates. After this, the various enzymes were consolidated into a cascade. “We were able to show that non-natural substrates could be converted into 5- and 6-ring cyclical ring structures including a nitrogen-nitrogen bond,” reports Tischler. In some instances, a chiral center that is crucial for the later syntheses of pharmaceutical substances was inserted.

Funding

The work was conducted as part of the BiodeCCodiNNg doctoral network funded by the European Union. Artur Maier received funding as part of the MiCon doctoral network, itself funded by the Deutsche Forschungsgemeinschaft.

Yongxin Li, Angelina Osipyan, Niels A.W. de Kok, Simon Schröder, Maria Founti, Peter Fodran, Ronald van Merkerk, Artur Maier, Dirk Tischler, Sandy Schmidt: Access to Nitrogen–Nitrogen Bond-Containing Heterocycles Through Substrate Promiscuity of Piperazate Synthases, in: ACS Catalysis, 2025, DOI: 10.1021/acscatal.5c01237
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  • Dirk Tischler (left) and Artur Maier testing enzymes© RUB, Marquard The image may only be used in the context of the press release "New Agents with Genome Mining and Mutagenesis" published by RUB on May 12, 2025.
Regions: Europe, Germany
Keywords: Science, Life Sciences

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