Single-molecule monitoring reveals the origin of reaction chirality
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Single-molecule monitoring reveals the origin of reaction chirality


Molecular chirality is a fundamental feature of living systems and asymmetric chemistry, yet its origin remains unresolved because the earliest symmetry-breaking events are usually obscured in ensemble measurements. In particular, a persistent challenge is to determine how stochastic single-molecule events evolve into population-level enantiomeric excess.

Now, a team at Peking University and collaborating institutions has established a single-molecule platform for real-time, from-the-start monitoring of asymmetric evolution in a Diels–Alder reaction. Using graphene–molecule–graphene single-molecule junctions together with the chirality-induced spin selectivity effect, the researchers directly observed spontaneous mirror-symmetry breaking, identified the molecular origin of reaction chirality, and further demonstrated catalyst-free on-line asymmetric synthesis under electrical control.

Real-time observation of spontaneous mirror-symmetry breaking
In this study, the researchers designed a graphene-based single-molecule junction that enables in situ monitoring of the full reaction trajectory, including intermediate states, pre-reaction charge-transfer complexes, and product states. By introducing ferromagnetic electrodes, they used the chirality-induced spin selectivity effect to distinguish chiral product states in real time. Event-resolved trajectories showed that the corresponding enantiomeric excess did not evolve monotonically, but instead passed through a process of initial symmetry breaking, oscillatory compensation, and eventual stabilization. Mechanistic analysis showed that reaction chirality is not established in the cycloaddition step itself. Instead, it is determined earlier, before formation of the pre-reaction complex, through the initial configuration of the acrylic acid substrate and its coupling to the external electric field.
Based on this, the researchers proposed an excess-compensation mechanism for chiral amplification. In this picture, a small initial enantiomeric excess triggers compensatory formation of the opposite enantiomer, producing oscillations in enantiomeric excess before the system evolves toward a stable enantiomerically enriched state. Temperature-dependent measurements, autocorrelation analysis, and theoretical calculations supported this mechanism.

Electrical control enables on-line asymmetric synthesis
Based on these mechanistic insights, the team developed an on-line asymmetric synthesis strategy. Because the relevant pre-reaction complexes are electrically detectable and have lifetimes on the second timescale, selected reaction pathways can be activated by applying a 1 V pulse at the target charge-transfer state and removing it at the cation state.

Using this approach, the researchers achieved precise control over both stereoselectivity and regioselectivity, with an enantiomeric excess of near 100% and diastereomeric excess above 88%. The work provides a molecular-level framework for understanding the emergence of chirality and suggests a route toward electrically regulated, catalyst-free asymmetric synthesis.

The complete study is accessible via DOI:10.34133/research.1150
Title: Origin of Single-Molecule Reaction Chirality
Authors: CHEN YANG, SHUYAO ZHOU, YILIN GUO HTTPS://ORCID.ORG/HTTPS://ORCID.ORG/0009-0003-9401, XINMIAO XIE, JU WANG, YANWEI LI , JINGYUAN HU, LINGHAI XIE , ZHIRONG LIU HTTPS://ORCID.ORG/HTTPS://ORCID.ORG/0000-0001-5070, GUANGWU LI , AND XUEFENG GUO
Journal: RESEARCH 24 Feb 2026 Vol 9 Article ID: 1150
DOI: 10.34133/research.1150
Archivos adjuntos
  • Fig. 1. Study of emergent chirality at single-molecule scale. (A) The traditional strategy of studying SMSB is to detect the excess of chiral enantiomers in the macroscopic system at the spatial scale. The strategy in ​​this work is to monitor the evolution of reaction symmetry in real time with single-event resolution. (B) Schematic diagram of real-time monitoring of SMSB via single-molecule junctions. The molecular bridge provides the substrate binding site for monitoring the Diels–Alder reaction, accompanied by forming a chiral carbon. (C) Schematic diagram of using the CISS effect to identify chirality. Enantiomers have different filtering effects on spin-polarized electrons. (D) The ee values versus time, indicating SMSB at the single-molecule level.
  • Fig. 2. Monitoring of the Diels–Alder reaction at single-molecule resolution. (A) Detected species and corresponding conversion relationship in the whole reaction scenario. (B) I−t curves of the Diels–Alder reaction at 100 K and 1 V, enlarged image, statistical results, and assignments of the states. The histogram illustrates the thermodynamic properties at equilibrium. Notably, there is no obvious chiral preference, as both R-PS and S-PS exhibit nearly equivalent occupancy. In addition, the preference of products with para configuration (p-PS) was observed, which is consistent with the results obtained from computational simulations (Fig. S5). (C) Assignment of conductance states by ex situ synthesis with added standard samples. (D) Plot of cumulative chiral product number versus time. Insets show typical current curves for different chiral products generated. (E) Plot of the corresponding ee value versus time. (F and G) Multiple reaction evolution trajectories indicate a break in the symmetry of the reaction, resulting in S- (F) or R- (G) dominated products. (H) The evolution trajectories of several reactions indicate that the reactions tend to racemize at 110 K. m: meta-configuration. p:para-configuration. CT: pre-reaction charge transfer complex salt state. P: product. PS: product state. re and si represent the re and si face of the C+, respectively. Evolution trajectories derived from 5 independent single-molecule devices.
  • Fig. 3. Mechanism of SMSB of the Diels–Alder reaction. (A) Statistical conversion relationship mapping among C+, IS, CTs, and PSs with 1-V bias and 100-K and +2-T magnetization. (B) Reaction scenarios at the re face and at different directions of the EEF. (C) Reaction scenarios at the si face and at different directions of the EEF. (D) For a given IS configuration, the energy barriers of various reaction pathways under different electric fields. (E) Plot of the ee value versus time. The density on time scale is represented by color. Inset: Enlarged image of the ee transition point. (F) Plot of the corresponding dwell time versus time. The density on time scale is represented by color. (G) Density map of transition points of multiple reaction evolution trajectories. (H) Autocorrelation function of the dwell time of chiral products at different temperatures. (I) Autocorrelation function of the dwell time of products involving regio-selectivity at different temperatures. (J) Proposed excess-compensation mechanism of the chiral amplification. (K) Conventional concept of the chiral amplification.
Regions: Asia, China
Keywords: Applied science, Nanotechnology, Science, Chemistry

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