Medicinal plants synthesize a wide range of specialized metabolites that form the foundation of many modern and traditional therapies. In Salvia miltiorrhiza, tanshinones are the primary compounds responsible for its therapeutic effects, yet their natural abundance is often insufficient to meet growing demand. Conventional genetic approaches, such as gene overexpression, frequently cause unintended side effects or unstable expression. Meanwhile, translational regulation—how efficiently proteins are produced from existing mRNA—has remained largely unexplored in medicinal plant breeding. Upstream open reading frames (uORFs) are known to repress translation in many organisms, but their potential as engineering targets in medicinal species has been unclear. Based on these challenges, there is a clear need to explore new strategies that precisely enhance metabolite biosynthesis.
Researchers from Shanghai Jiao Tong University and collaborating institutions report a new CRISPR-based strategy to enhance the production of tanshinones in Salvia miltiorrhiza. The study, published (DOI: 10.1093/hr/uhaf249) online in 2025 in Horticulture Research, shows that targeted editing of uORFs in the key diterpene synthase gene SmCPS1 significantly increases tanshinone accumulation in plant roots. By fine-tuning translation rather than transcription, the team achieved up to an 1.8-fold increase in total tanshinone content while preserving normal plant development.
The researchers identified five conserved uORFs within the 5′ untranslated region of SmCPS1, a rate-limiting enzyme in the tanshinone biosynthetic pathway. Using multiplex CRISPR/Cas9 editing, they generated several uORF-modified plant lines with distinct regulatory architectures. Detailed molecular analyses revealed that uORF disruption did not alter SmCPS1 mRNA levels, but substantially increased the accumulation of the SmCPS1 protein, confirming that the edits enhanced translation efficiency rather than gene transcription.
Metabolic profiling showed striking phenotypic effects. Two edited lines exhibited dramatically deeper red root coloration—an indicator of tanshinone enrichment—and quantitative analysis confirmed increases of up to 1.81-fold in total tanshinone accumulation compared with unedited plants. Individual bioactive compounds, including tanshinone I, tanshinone IIA, cryptotanshinone, and dihydrotanshinone, were all elevated to varying degrees.
Importantly, the enhanced production of tanshinones was accompanied by coordinated upregulation of multiple downstream biosynthetic genes, suggesting that increasing flux at a single translational control point can reshape the entire metabolic network. This cascade effect highlights uORFs as powerful yet subtle regulators capable of amplifying metabolic output without destabilizing gene expression systems.
“Our results show that uORFs act like hidden switches controlling how much protein a plant actually produces,” said the study's senior authors. “By editing these elements, we can precisely increase enzyme abundance without forcing the plant into an artificial overexpression state.” They emphasized that this strategy avoids many drawbacks of traditional transgenic approaches and allows fine-scale tuning of metabolite levels. According to the researchers, uORF engineering represents a versatile and predictable tool for improving the yield of pharmaceutically important compounds in medicinal plants.
This work establishes uORF engineering as a new frontier in medicinal plant biotechnology. The approach could be applied broadly to enhance the production of terpenoids, alkaloids, and other valuable natural products across diverse species. By operating at the translational level, uORF editing offers dose-responsive control and minimizes unintended effects on plant growth and fitness. In the long term, this strategy may support more sustainable production of plant-derived medicines, reduce reliance on chemical synthesis, and accelerate precision breeding programs. As CRISPR tools and predictive models advance, uORF-based regulation could become a cornerstone of next-generation metabolic engineering and synthetic biology in agriculture and pharmaceutical research.
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References
DOI
10.1093/hr/uhaf249
Original Source URL
https://doi.org/10.1093/hr/uhaf249
Funding information
This work was supported by the Scientific and Technological Project of China Academy of Chinese Medical Sciences (CI2024C005YN, CI2023E002), the Sustainable Utilization Capacity Building Project for Valuable Chinese Medicinal Resources (2060302), the National Key R&D Program of China (2018YFA0900600), and grants from the Shanghai Jiao Tong University Transmed Awards Program (20190104).
About Horticulture Research
Horticulture Research is an open access journal of Nanjing Agricultural University and ranked number one in the Horticulture category of the Journal Citation Reports ™ from Clarivate, 2023. The journal is committed to publishing original research articles, reviews, perspectives, comments, correspondence articles and letters to the editor related to all major horticultural plants and disciplines, including biotechnology, breeding, cellular and molecular biology, evolution, genetics, inter-species interactions, physiology, and the origination and domestication of crops.